- Basser PJ, Mattiello J, LeBihan D. MR diffusion tensor spectroscopy and imaging. Biophys J. 1994;66(1):259-67. doi: 10.1016/S0006-3495(94)80775-1. PubMed PMID: 8130344. PubMed PMCID: PMC1275686.
- Tuch DS. Q-ball imaging. Magn Reson Med. 2004;52(6):1358-72. doi: 10.1002/mrm.20279. PubMed PMID: 15562495.
- Wedeen VJ, Hagmann P, Tseng WY, Reese TG, Weisskoff RM. Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn Reson Med. 2005;54(6):1377-86. doi: 10.1002/mrm.20642. PubMed PMID: 16247738.
- Tournier JD, Calamante F, Gadian DG, Connelly A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. Neuroimage. 2004;23(3):1176-85. doi: 10.1016/j.neuroimage.2004.07.037. PubMed PMID: 15528117.
- Donahue CJ, Sotiropoulos SN, Jbabdi S, Hernandez-Fernandez M, et al. Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey. J Neurosci. 2016;36(25):6758-70. doi: 10.1523/JNEUROSCI.0493-16.2016. PubMed PMID: 27335406. PubMed PMCID: PMC4916250.
- Daducci A, Dal Palú A, Descoteaux M, Thiran JP. Microstructure Informed Tractography: Pitfalls and Open Challenges. Front Neurosci. 2016;10:247. doi: 10.3389/fnins.2016.00247. PubMed PMID: 27375412. PubMed PMCID: PMC4893481.
- Shirazinodeh A, Salighehrad H. Improving performance of tractography algorithm by using local phase features. In Proceedings of the 2021 ISMRM & SMRT; USA: ISMRM; 2021.
- McNab JA, Polimeni JR, Wang R, Augustinack JC, Fujimoto K, et al. Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex. Neuroimage. 2013;69:87-100. doi: 10.1016/j.neuroimage.2012.11.065. PubMed PMID: 23247190. PubMed PMCID: PMC3557597.
- Miller KL, Stagg CJ, Douaud G, Jbabdi S, Smith SM, Behrens TEJ, Jenkinson M, Chance SA, et al. Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. Neuroimage. 2011;57(1):167-81. doi: 10.1016/j.neuroimage.2011.03.070. PubMed PMID: 21473920. PubMed PMCID: PMC3115068.
- Sotiropoulos SN, Hernández-Fernández M, Vu AT, Andersson JL, Moeller S, Yacoub E, et al. Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project. Neuroimage. 2016;134:396-409. doi: 10.1016/j.neuroimage.2016.04.014. PubMed PMID: 27071694. PubMed PMCID: PMC6318224.
- Uğurbil K, Xu J, Auerbach EJ, Moeller S, Vu AT, Duarte-Carvajalino JM, Lenglet C, Wu X, Schmitter S, et al. Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. Neuroimage. 2013;80:80-104. doi: 10.1016/j.neuroimage.2013.05.012. PubMed PMID: 23702417. PubMed PMCID: PMC3740184.
- Ma X, Uğurbil K, Wu X. Denoise magnitude diffusion magnetic resonance images via variance-stabilizing transformation and optimal singular-value manipulation. Neuroimage. 2020;215:116852. doi: 10.1016/j.neuroimage.2020.116852. PubMed PMID: 32305566. PubMed PMCID: PMC7292796.
- McGibney G, Smith MR. An unbiased signal-to-noise ratio measure for magnetic resonance images. Med Phys. 1993;20(4):1077-8. doi: 10.1118/1.597004. PubMed PMID: 8413015.
- Sijbers J, Den Dekker AJ, Van Dyck D, Raman E. Estimation of signal and noise from Rician distributed data. In Proceedings of the International Conference on Signal Processing and Communications; Canaria, Spain; 1998. p. 140-2.
- Aja-Fernandez S, Alberola-Lopez C, Westin CF. Noise and signal estimation in magnitude MRI and Rician distributed images: a LMMSE approach. IEEE Trans Image Process. 2008;17(8):1383-98. doi: 10.1109/TIP.2008.925382. PubMed PMID: 18632347.
- Wiest-Daesslé N, Prima S, Coupé P, Morrissey SP, Barillot C. Rician noise removal by non-Local Means filtering for low signal-to-noise ratio MRI: applications to DT-MRI. Med Image Comput Comput Assist Interv. 2008;11(Pt 2):171-9. doi: 10.1007/978-3-540-85990-1_21. PubMed PMID: 18982603. PubMed PMCID: PMC2665702.
- Eichner C, Cauley SF, Cohen-Adad J, Möller HE, Turner R, Setsompop K, Wald LL. Real diffusion-weighted MRI enabling true signal averaging and increased diffusion contrast. Neuroimage. 2015;122:373-84. doi: 10.1016/j.neuroimage.2015.07.074. PubMed PMID: 26241680. PubMed PMCID: PMC4651971.
- Campbell JS, Pike GB. Potential and limitations of diffusion MRI tractography for the study of language. Brain Lang. 2014;131:65-73. doi: 10.1016/j.bandl.2013.06.007. PubMed PMID: 23910928.
- Poupon C, Rieul B, Kezele I, Perrin M, Poupon F, Mangin JF. New diffusion phantoms dedicated to the study and validation of high-angular-resolution diffusion imaging (HARDI) models. Magn Reson Med. 2008;60(6):1276-83. doi: 10.1002/mrm.21789. PubMed PMID: 19030160.
- Aganj I, Lenglet C, Jahanshad N, Yacoub E, Harel N, Thompson PM, Sapiro G. A Hough transform global probabilistic approach to multiple-subject diffusion MRI tractography. Med Image Anal. 2011;15(4):414-25. doi: 10.1016/j.media.2011.01.003. PubMed PMID: 21376655. PubMed PMCID: PMC3115463.
- Felsberg M, Sommer G. The monogenic signal. IEEE Transactions on Signal Processing. 2001;49(12):3136-44. doi: 10.1109/78.969520.
- Unser M, Sage D, Van De Ville D. Multiresolution monogenic signal analysis using the Riesz-Laplace wavelet transform. IEEE Trans Image Process. 2009;18(11):2402-18. doi: 10.1109/TIP.2009.2027628. PubMed PMID: 19605325.
- Leemans A, Sijbers J, Verhoye M, Van Der Linden A, Van Dyck D. Mathematical framework for simulating diffusion tensor MR neural fiber bundles. Magn Reson Med. 2005;53(4):944-53. doi: 10.1002/mrm.20418. PubMed PMID: 15799061.
- Fadnavis S, Batson J, Garyfallidis E. Patch2Self: Denoising Diffusion MRI with Self-Supervised Learning. 34th Conference on Neural Information Processing Systems; Vancouver, Canada: NeurIPS; 2020.
- Moeller S, Pisharady PK, Ramanna S, Lenglet C, Wu X, Dowdle L, Yacoub E, Uğurbil K, Akçakaya M. NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing. 2021;226:117539. doi: 10.1016/j.neuroimage.2020.117539. PubMed PMID: 33186723. PubMed PMCID: PMC7881933.
|